A fuel cell system includes a fuel cell, a fuel tank, a first passage which supplies liquid fuel from the fuel tank to the fuel cell, a cartridge holder in which a plurality of types of cartridges are replaceably loaded, a second passage which supplies the content discharged from the cartridge to the fuel cell, a cartridge detector which detects the type of cartridge loaded in the cartridge holder, and a passage control means which controls the passages in accordance with the type of cartridge detected.