Methods for configuring an embedded system are described. One method includes connecting a plurality of add-on cards to a circuit board having a programmable processor. The programmable processor is configured to communicate with the plurality of add-on cards. At least one add-on card connects to a circuit board utilizing two or more connectors. The method also includes determining an identifier of each of the plurality of add-on cards, where the identifier of each of the plurality of add-on cards is used to generate a configuration image. Further included is configuring the programmable processor to communicate with the plurality of add-on cards by obtaining the configuration image. In some examples, the programmable processor is an FPGA.