A fan system includes a stator magnetic pole, a driving unit and a real-time stopping unit. The driving unit is coupled with the stator magnetic pole and controls a polarity change of the stator magnetic pole in accordance with a driving signal. The real-time stopping unit is electrically connected with the driving unit. When the fan system is powered off, the driving unit enables two ends of the stator magnetic pole to have the same voltage level in accordance with a control signal generated by the real-time stopping unit so that the fan system stops operating immediately.