A method of transitioning a cylinder of an engine from a spark ignition mode to a homogeneous charge compression ignition mode, the cylinder having at least one electrically actuated intake valve and at least one exhaust valve, the method comprising of before a transition, operating the cylinder with at least some overlap between an opening event of the intake valve and an opening event of the exhaust valve in the spark ignition mode; in response to a transition request, operating the cylinder with at least some negative overlap between an opening event of the intake valve and an opening event of the exhaust valve, retarding the intake valve opening and closing timing by different amounts and retarding ignition timing; and further increasing negative overlap and performing the homogeneous charge compression ignition mode.