A purge valve for a split fuel cell stack design that prevents a direct flow path between the anode sides of the split stacks. The purge valve includes an inlet port that receives purge air from a compressor, a first outlet port in fluid communication with the anode side of one of the split stacks and a second outlet port in fluid communication with the anode side of the other split stack. A spring biased shaft maintains a diaphragm in a closed position to close off the flow channels between the inlet port and the first outlet port, the inlet port and the second outlet port and the first and second outlet ports during normal fuel cell operation. A hole is provided through the diaphragm to provide pressure equalization in the chamber.