A system and method may be provided for operating a system having an engine with an emission control system, the emission control system including a lean NOx trap and a particulate filter, where after lean exhaust gas air-fuel ratio regeneration of the particulate filter at an elevated regeneration temperature, a rich or intermittently rich exhaust air-fuel ratio is provided for a duration lasting until LNT temperature falls to a minimum threshold, where said rich or intermittently rich operation reactivates catalysts in the LNT and reverses deactivation caused by the elevated temperature lean operation associated with previous particulate filter regeneration.