A fuel cell system that employs a technique for safely removing hydrogen gas that accumulates within a cooling fluid reservoir. The fuel cell system includes a fuel cell stack and a compressor for providing airflow to the cathode side of the fuel cell stack. The system also includes an air filter box having an air filter that is in fluid communication with an air pocket in the reservoir. The air intake to the compressor flows through the air filter box, and sucks the gas from the reservoir, which is then sent to the cathode side of the fuel cell stack to be converted to water by the electro-chemical reaction therein.