The present invention provides a data transmitting method with hybrid automatic repeat request in multi-carrier system. In this method, the signal-to-noise ratios of respective sub-carriers are compared with a threshold, the data on the sub-carriers having the signal-to-noise ratios lower than the threshold are selectively retransmitted by mapping these data onto the sub-carriers having the good channel conditions, and then the retransmitted data are combined hybrid-automatically in the receiver of the opposite terminal. By using the method the system throughput can be enhanced effectively without impairing the bit error rate of the system.