Handwriting recognition techniques employing a personalized handwriting recognition engine. The recognition techniques use examples of an individual's previous writing style to help recognize new pen input from that individual. The techniques also employ a shape trainer to select samples of an individual's handwriting that accurately represent the individual's writing style, for use as prototypes to recognize subsequent handwriting from the individual. The techniques also alternately or additionally employ an intelligent combiner to combine the recognition results from the personalized recognition engine and the conventional recognition engine (or engines). The combiner may use a comparative neural network to combine the recognition results from multiple recognition engines. The combiner alternately may use a rule-based system based on prior knowledge of different recognition engines.