A method and system for automatically determining ischemia detection parameters are provided. The method includes obtaining a baseline trace indicative of a cardiac behavior, determining an ischemia detection window based on at least one physiologic state indicator within the baseline trace, and automatically identifying a fiducial point based on the baseline segment trace. The baseline trace includes a baseline segment within the ischemia detection window; where the ischemia detection window and the fiducial point may constitute ischemia detection parameters.