A control system and method for controlling pump includes a pump control module communicating a drive signal to the high pressure pump and a high pressure pump in communication with the pump control module operating in response to the drive signal. A current sampling module samples a pump current signal to form a sample prior to an end of the drive signal. A current comparison module compares the sample to a threshold that may be a function of pump solenoid resistance, pump solenoid temperature, and/or system voltage, and a fault indication module generates a fault signal in response to comparing.