A method for generating an image of an object using a scanning system includes performing a first portion of a scan in a first scanning mode to acquire a first dataset, receiving a halt command for a conveyor within the scanning system, decelerating the conveyor to a halt based on the halt command using a conveyor controller, and, when the object is present within an examination region after the conveyor has halted, performing a second portion of the scan in a second scanning mode to acquire a second dataset. The second scanning mode is different than the first scanning mode. The method also includes reconstructing the first dataset using a first reconstruction algorithm and reconstructing the second dataset using a second reconstruction algorithm. The second reconstruction algorithm is different than the first reconstruction algorithm. The image is generated using the first reconstructed dataset and the second reconstructed dataset.