Provided are an apparatus and method for tracking a wavelength in a passive optical subscriber network in which a central base station and at least one subscriber terminal are connected via a remote node. The apparatus includes a first wavelength aligning unit multiplexing and aligning wavelengths of optical signals from a plurality of single-mode optical sources of the central base station; a second wavelength aligning unit multiplexing and aligning wavelengths of optical signals transmitted to the remote node from a plurality of single-mode optical sources of the subscriber terminal; and a third wavelength aligning unit demultiplexing and aligning wavelengths of optical signals from the second wavelength aligning unit, the third wavelength aligning unit being included in the central base station. Accordingly, when the wavelengths of passbands of a multiplexer/demultiplexer (MUX/DEMUX) of a remote station change due to a change in the ambient temperature, wavelength tracking is performed by making aligned the wavelengths of optical sources of a central base station, a multiplexer/demultiplexer, and subscriber terminals, thereby minimizing optical channel loss and enabling reliable management of WDM-PON.