Methods and apparatus are provided for analyzing transmission lines with decoupling of connectors and other circuit elements. According to one aspect of the invention, circuits with one or more parasitic elements are analyzed by partitioning at least one of the parasitic elements in a transverse manner; identifying a plurality of subcircuits each comprised of partitioned circuit elements from the plurality of transmission lines and one or more parasitic elements in a given path; wherein each of the subcircuits is associated with a path in the circuit; performing a waveform relaxation analysis between each of the subcircuits; and repeating the step of performing the waveform relaxation analysis using waveforms determined in a previous iteration until convergence to a resultant waveform has occurred. The circuit can optionally further comprise one or more transmission lines which would also be partitioned in a transverse manner.