A system isolates a control system for a downhole tool from the internal pressures in the tubing in which the tool is mounted. Opposed seals are used on a moving component in the tool so as to offset pressure induced forces regardless of the internal operating pressure of the tool. In a particular application to a subsurface safety valve the control system can be isolated from tubing pressure by offset seals between the passage and the flow tube or around exposed portions of the operating piston for the flow tube.