One disclosed feature of the embodiments is a method of aligning transport modules in a printing system, the method comprising a step (a) including passing at least one substrate media in a process direction through two adjacent belt driven transport modules with at least one module belt steering control disabled. The method also comprising a step (b) including detecting a position of at least one module transport belt in a cross-process direction using an edge sensor. Further, the method comprising a (c) including aligning the two adjacent transport modules based on the detected cross-process position.