An electronic device for decoding a navigation data by using a phase angle variation and a method thereof are described, which includes the following steps. A phase angle difference between the first phase angle of the first navigation data and the second phase angle of the second navigation data from a satellite signal is calculated. When the phase angle difference is greater than 90 degrees, the first navigation data and the second navigation data are determined to have opposite signs. The second navigation data according to the first navigation data and the result is determined. Therefore, each data is interpreted through directly comparing whether the phase angle difference with the previous data is greater than 90 degrees or not, so that the correct rate in decoding the navigation data is increased.