A method and system for organizing a plurality of files generated by an Electronic Design and Automation (EDA) tool into composite objects is disclosed. The system provides a plurality of rules, which may be configured for various EDA tools. These rules may be configured for any EDA tool by specifying various parameters such as filename patterns, file formats, directory name patterns, and the like. Using these rules which are configured for an EDA tool, the files that form a part of the design objects are identified and packaged in the form of composite objects.