An apparatus and a method can improve the performance of a smart antenna system for signal processing in the frequency domain. The method includes: performing Fast Fourier Transform (FFT) on a plurality of incoming signals received through antennas according to a predetermined FFT window; detecting a boundary of an OFDM symbol and setting the FFT window with a margin as large as a predetermined FFT window offset with reference to the detected symbol boundary; receiving the FFT window offset and generating an FFT window calibration signal; and multiplying the FFT-processed incoming signals by the FFT window calibration signal. The method can improve the reception performance of a base station by compensating for the multi-path channel by using an RX FEQ coefficient obtained by a receiver of a terminal as an FEQ weight of a transmitter of the terminal. Further, the method can generate a uniform non-directional beam by generating a variable omni-directional beam pattern in a smart antenna system.