The present invention provides a control system which is used for a stacked battery of a plurality of battery packs. Each battery pack has a plurality of battery cells coupled in series. The control system is capable of reconfiguring communication among the battery packs in the stacked battery, and comprises a plurality of processors, a plurality of controllers, and a monitoring unit. The processors are coupled to the battery packs. Two adjacent processors among the processors are able to communicate with each other though a first bus. The controllers are coupled to the battery packs. Two adjacent controllers among the controllers are able to communicate with each other through a second bus. The processors are capable of communicating with the controllers through a third bus. The monitoring unit is used for monitoring communications among the plurality of processors and communications among the plurality of controllers. The monitoring unit is capable of detecting communication problems on the first bus and/or the second bus. The monitoring unit further is capable of reconfiguring communication paths among the plurality of processors and communication path among the plurality of controllers.