Embodiments of the present invention provide a substrate of a liquid crystal display (LCD) panel, a liquid crystal panel, and a manufacturing method thereof. The substrate of a LCD panel comprises a first substrate, a color filter layer comprising color resins and a black matrix and formed on one surface of the first substrate, a transparent layer formed on the color filter layer and having a planar surface, and an array structure layer formed on the planar surface of the transparent layer or on the other surface of the first substrate.