A method, apparatus and computer program product are provided for implementing diagnostics of transitional scan chain defects using structural Logic Built In Self Test (LBIST) test patterns. A LBIST test pattern is applied to the device under test and multiple system clock sequences with variable loop control are applied in a passing operating region and scan data is unloaded. The LBIST test pattern is applied to the device under test and multiple system clock sequences with variable loop control are applied in a failing operating region for the device under test and scan data is unloaded. Then the unload data from the passing operating region and the failing operating region are compared. The identified latches having different results are identified as potential AC defective latches. The identified potential AC defective latches are sent to a Physical Failure Analysis system.