Systems and methods for verifying branding of pharmaceutical/medical containers are provided. In some embodiments, systems for verifying branding of at least one medication container associated with at least one of a prescription and medication order are provided. The systems including: a scanning system including at least one scanner for determining the branding of at least one of a first medication container and a cap used to cover the first medication container; a transport system that transports the first medication container; and a control system that: controls the transport system to transport the first medication container to the scanning system; and controls the scanning system to determine whether the branding of at least one of the first medication container and the cap correctly matches a predetermined branding among a plurality of brandings based on predetermined criteria.