An automatic recovery and transport system includes a manufacture execution system, a path planning system electrically connected with the manufacture execution system, a vehicle control system electrically connected with the path planning system, a plurality of vehicles electrically connected with the vehicle control system; and an alarm system electrically connected with the path planning system and the vehicle control system. The alarm system will command the path planning system to command the vehicle control system to drive the vehicle about to stop to enter the maintenance area immediately. Accordingly, the stability and the work efficiency of the whole system are improved. The present invention also provides a method for executing an automatic recovery and transport system.