A method for logging a subsurface formation includes acquiring neutron capture data using a pulsed neutron tool at a plurality of locations along a borehole penetrating the subsurface formation, wherein the plurality of locations include a formation zone that contains water; comparing an apparent water salinity or an apparent water sigma value estimated from the neutron capture data acquired in the formation zone that contains water with a water salinity or water sigma value of a water sample from the subsurface formation to produce a calibration parameter for the neutron capture data; and correcting the neutron capture data, based on the calibration parameter, to produce corrected neutron capture data. The method may further include determining a water saturation from the corrected neutron capture data.