An intelligent platform management interface (IPMI) server management system includes a managing side and a plurality of managed sides. The managed sides includes at least on active IPMI managed sides, wherein each of the active IPMI managed side actively provides its service information to the managing side so as to establish a first list, and then the managing side searches out the managed sides which are not on the first list one by one so as to establish a second list. Therefore, the IPMI server management system may effectively sort out the managed sides which are available for application.