A system is provided for optimizing a path for a marine vessel through a waterway from an initial location to a final location. The system includes a propulsion system and a directional system on the marine vessel, which impart a selective propulsion force on the marine vessel at a selective direction based on a received propulsion command and direction command from a processor. The processor determines an optimal path for the marine vessel, an optimal propulsion command and optimal directional command at a respective incremental location along the optimal path, so to optimize a performance characteristic of the marine vessel. The determination of the optimal path, the optimal propulsion command and the optimal directional command is based on the initial location, the final location, at least one operating parameter, the performance characteristic, and navigational data of the waterway.