A sample processing apparatus prevents samples and reagents from being degraded due to a prolonged waiting time other than for reaction and improves the operation efficiency of the apparatus. The apparatus includes a plurality of processing sections for causing at least two samples to react independently, an input/output terminal 15 for inputting the upper limit of the waiting time and the reaction time for each of the samples, a schedule management section for determining at least the clock time of introducing each of the samples, the processing section to be used for processing the sample and/or the waiting time for the sample, and a general control section for controlling the processing of the samples at the plurality of processing sections according to the determination by the schedule management section.