The present invention is generally directed to a method, system, and article of manufacture that ensures the integrity of programs having variable portions. One aspect of this invention is a method for protecting software products having variant portions. This method includes identifying a reference to an external target in a software product, creating an identifier for the external target, and adding the identifier to the reference. In some embodiments, the unique identifier is a digital signature and the reference to an external target is a call to an external library.