A turbofan engine deicing system includes a core nacelle (12) housing a turbine. A turbofan (20) is arranged upstream from the core nacelle. A controller (50) manipulates the turbofan in response to detecting an icing condition for avoiding undesired ice buildup on the turbofan engine (10) and nacelle parts. In one example, a variable area nozzle (40) is actuated to generate pressure pulses or a surge condition to break up any ice buildup. The icing condition can be determined by at least one sensor (52) and/or predicted based upon icing conditions schedules.