Disclosed herein is a method of controlling an Anti-lock Brake system (ABS) of an electronic brake, which is driven using an electric motor. In ABS braking in which braking and braking-release motions are repeated according to a wheel slip value, the electric motor is controlled in a re-braking section to link a position of a brake pad with a change in wheel speed, to enhance ABS control responsiveness and to reduce stopping distance with maximized brake force.