A data management method, a memory controller and a memory storage apparatus are provided. The method includes grouping physical units of a rewritable non-volatile memory module into at least a data area and a free area. The method also includes configuring logical units for mapping to the physical units of the data area and writing update data belonging to the logical pages of the logical units orderly into the physical pages of physical units gotten from the free area. The method further includes configuring root units for the logical pages, configuring an entry chain for each of the root units and building entries on the entry chains for recording update information of the updated logical pages, wherein each of the logical pages corresponds to a root unit. Accordingly, the table size for storing the update information is effectively reduced and the time for searching valid data is effectively shortened.