A capsule medical system includes a capsule medical apparatus, a selecting unit, and a control unit. The capsule medical apparatus is introduced inside a subject and includes an imaging unit for taking an in-vivo image of the subject, a treating unit for treating a living tissue in the subject, and a driving unit for contributing to movement of the capsule medical apparatus. The selecting unit selects a treatment target of the treating unit from the in-vivo image. The control unit determines a relative distance between the treatment target and the treating unit, and moves the capsule medical apparatus in an imaging direction of the imaging unit by a distance corresponding to the relative distance using the driving unit.