In a data processing apparatus and a data processing system including the same, the data processing apparatus includes a clock signal generation unit configured to receive a data signal comprising a preamble signal, information about DC balance codes for DC balance, an embedded clock signal between the DC balance codes, and information about serialized valid data, to generate a synchronous clock signal that is synchronized with the serialized valid data based on the data signal, and to generate at least one sample clock signal based on the synchronous clock signal; and a data processor configured to deserialize the serialized valid data based on the at least one sample clock signal, to decode deserialized data based on the DC balance codes, and to output decoded data.