According to one embodiment, a magnetic disk drive includes a detector and a servo controller. The detector detects, as actual timestamps, time intervals at which a head reads servo sync marks recorded on a disk at predetermined intervals. The servo controller controls a VCM actuator and a microactuator with feedback control in order to position the head at a target position. The servo controller comprises a feedforward controller configured to compensate for disturbance. The feedforward controller comprises a difference detector and an integrator. The difference detector detects a deviation of the actual timestamps from target timestamps as a timestamp difference. The integrator configured to convert the detected timestamp difference into displacement of the microactuator by integrating the detected timestamp difference. The feedforward controller provides a manipulating variable corresponding to the converted displacement, to a feedback control loop for the microactuator as a feedforward manipulating variable.