A multi-track handling and storage apparatus includes at least two main tracks, at least two cranes and an intelligent integrated logic system. The main tracks are arranged separately, and every two adjacent main tracks are connected by at least one switching track. Bottoms of the cranes are slidably disposed on the main tracks. The intelligent integrated logic system includes a command receiving unit, a database unit, an analyzing unit, a crane dispatching unit and a route selection unit which are integrated with each other. The above-mentioned main tracks, switching tracks and cranes are controlled by the units of the intelligent integrated logic system. The present invention further provides a multi-track handling and storage method.