A method for determining a relationship between a hard disk drive throughput and a vibration source adapted in a computer device having a hard disk drive and the vibration source is disclosed. The method includes receiving a vibration sensing signal associated with the vibration source and a hard disk drive throughput rate associated with operations of the hard disk drive substantially at the same time, deriving a vibration sensing frequency function and a hard disk drive frequency function, determining whether a linear relationship exists between the vibration sensing frequency function and the hard disk drive frequency function, comparing the vibration sensing frequency function and the hard disk drive frequency function to derive a vibration information, and generating a counter vibration control signal according to the vibration information.