A method of manufacturing a highly reliable magnetic head slider, with a simplified manufacturing process which provides reduction in manufacturing time and costs, is provided. The manufacturing method includes a multi-layer forming step for forming a magnetic head section in a multi-layered manner, the magnetic head section including a read element and/or a write element and a magnetic shield for magnetically shielding the read element and/or the write element, and the magnetic head slider is manufactured by being cut off from a multi-layered body having the magnetic head section. The manufacturing method further includes, after the multi-layer forming step, a shield end removing step for removing end portions in a width direction of the magnetic shield located on the flying surface side of the magnetic head slider.