Control systems and methods of use provide for fully automated phases of flight of an aircraft. Such fully automated phases include takeoff, cruising flight, and landing without the need for operator input or other operator intervention. Control systems and methods also provide for self-limited compliance with an operators desired deviation from a predetermined flight path, as well as automatic contingency response to non-normal conditions. Onboard and/or ground-based operators may cooperate with the control system in order to control the associated aircraft. Furthermore, an operator need not have any flight skill in order to affect changes in the flight path or other aspects of flight control.