A method of refreshing data on a hard disk drive configured to carry out commands issued by a host that comprises tracking run-time conditions related to patterns of host command activity on the hard disk drive; selecting an entry from a high priority pool that is configured to hold a predetermined maximum number of entries, each entry comprising a plurality of tracks having been designated as being eligible for a high priority refresh operation as a result of the host command activity; refreshing data stored on at least one track of the selected entry; pausing the refreshing for a period of time equal to a throttle interval to process at least one command issued by the host before returning to the selecting or to the refreshing, and periodically modifying a value of the throttle interval depending upon the tracked run-time conditions.