Aspects of the disclosure provide a method for calibrating gains of an optical storage servo system having a plant. The method includes translating a first signal of the plant from a time domain effort signal into a frequency domain effort signal, translating a second signal of the plant from a time domain error signal into a frequency domain error signal, determining a first gain of the optical storage servo system based on the first signal and the second signal, comparing a third signal from an optical disk of the optical storage servo system with a predetermined threshold, and asserting a defect flag when the third signal drops below the predetermined threshold to avoid calibrating the first gain based on the first signal and the second signal.