According to one embodiment, a MRI apparatus includes a data acquisition unit, a phase correction amount calculation unit and an image data generating unit. The data acquisition unit acquires MR signals in 3D k-space according to an imaging condition for HFI. The phase correction amount calculation unit calculates a first phase correction amount by applying processing including a phase correction based on k-space data for calculating the first phase correction amount and data compensation for a non-sampling region with the MR signals in the 3D k-space. The k-space data for calculating the first phase correction are MR signals less than the MR signals in the 3D k-space. The image data generating unit generates MR image data by applying processing including a phase correction using a second phase correction amount based on the first phase correction amount and the data compensation with the MR signals in the 3D k-space.