A seal monitoring and control system for a gas lubricated non-contacting seal includes various sensors providing signals to a programmable logic control system. The control system is disposed to determine a presence of an anomalous operating condition of the seal, for example, based on phase, relative position of rotor to stator or other signals in combination provided by the various sensors to provide an output signal, which in one embodiment performs at least one mitigating process to correct the anomalous operating condition by adjusting at least one operating parameter of the seal.