A hydraulic pump system for an automatic transmission has the advantages of preventing excessive power loss and durability deterioration. The hydraulic pump system may include a first hydraulic pump that generates a first hydraulic pressure to supply a low pressure portion with the first hydraulic pump, a second hydraulic pump that receives the first hydraulic pressure to generate a second hydraulic pressure higher than the first hydraulic pressure and supplies a high pressure portion with the second hydraulic pressure, and a drive portion that rotates a drive shaft that integrally connects the first hydraulic pump with the second hydraulic pump.