A system and method for auto-transpose replication is provided. Auto-transpose replication may be considered the ability to automatically create copies of a given prototype model. Auto-transpose replication may include receiving a first list of data values and determining a total number of levels of the first list. Auto-transpose may also include creating a rectangularized list, where the rectangularized list is a rectangularized copy of the first list based on the determined total number of levels of the first list. Further, auto-transpose may include creating a return list, detecting an item at the deepest level of the rectangularized list, calculating an index trail of the item, rotating the values in the index trail, and storing the item into the return list according to the rotated index trail.