A printer is provided including a substrate transport apparatus; a pick mechanism; a fuser assembly having a heat transfer member including a belt and a heater, a backup member for engaging the belt so as to define a fusing nip with the belt, and a temperature sensor associated with the backup member for sensing the temperature of the backup member; and a controller coupled to the substrate transport apparatus, the pick mechanism, the heater and the temperature sensor. The controller causes the pick mechanism to remove substrates from the storage tray at a first pick rate when the backup member is at a temperature within a first backup member index temperature range and at different pick rate less than the first pick rate when the backup member is at a temperature greater than the first backup member index temperature range.