The present invention discloses an algorithm integrating system and an integrating method thereof. The algorithm integrating system comprises a receiving module, an analyzing module, and a processing module. The receiving module receives at least one test algorithm. The analyzing module is connected to the receiving module and analyzes the at least one test algorithm to obtain at least one basic element from the at least one test algorithm. The processing module is connected to the analyzing module and screen out the at least one non-duplicate basic element based on the at least one basic element. Then, the processing module integrates the at least one non-duplicate basic element and generates a testing module.