A method and system for detecting anomalies in an aeroengine. The method and system define a behavior model of a controller of the aeroengine using a time regression modeling the behavior of the controller as a function of a data set relating to the controller and including measurements of past behaviors and command and state measurements of the controller; continuously recalculate the behavior model for each new data set; and monitor statistical variation of the behavior model to detect a behavior anomaly of the controller representing an operating anomaly of the engine.