A fuel cell system includes a fuel cell, an operation controller and an air-conditioning mechanism. In response to a heating request for the air-conditioning mechanism during ordinary operation where the fuel cell is operated at an operating point on a current-voltage characteristic curve of the fuel cell, the operation controller compares a heat value-based required current value with an output-based required current value. When the output-based required current value is equal to or greater than the heat value-based required current value, the operation controller causes the fuel cell to be operated at an operating point on the current-voltage characteristic curve. When the output-based required current value is smaller than the heat value-based required current value, the operation controller controls the operating point of the fuel cell to an operating point of lower power generation efficiency than that of the operating point on the current-voltage characteristic curve.