A method of handling a retransmission of a hybrid automatic repeat request scheme for a receiver in a communication system is disclosed. The method comprises receiving a first payload from a transmitter in the communication system, and feeding back a resource index to the transmitter, to indicate a size for a second payload in the next reception, when the receiver is unsuccessful to decode the first payload into a plurality of information bits, wherein the transmitter encodes the plurality of information bits into the first payload by using an error correction code.